PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G39130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 837aa    MW: 90605.8 Da    PI: 5.7169
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G39130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-11664712355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  ONIVA02G39130.1 664 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 712
                      58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500538.96188IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.909.9E-72099No hitNo description
PROSITE profilePS5018111.405334380IPR001810F-box domain
SuperFamilySSF813831.83E-13334389IPR001810F-box domain
Gene3DG3DSA:1.20.1280.502.1E-10337389No hitNo description
PfamPF129374.8E-6339381IPR001810F-box domain
SMARTSM002561.5E-5340380IPR001810F-box domain
SuperFamilySSF474594.58E-17659727IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-11659716No hitNo description
Gene3DG3DSA:4.10.280.102.3E-17661728IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796661711IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-9664712IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10667717IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MKLRLRSMDQ RGGAGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS  60
EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQAQPLPRNP NPDVPSIAGA  120
ADPTKSPVES GSSSSMPQAL CTNPGLPVAS DPHHPPPDVV MAEAFAVIKS KSSLVVGATK  180
REMENVGGAD GTVICRLVVA LHAALLDAGF LYANPVGSCL QLPQSGSFVP VSMKYTLPEL  240
VEALPAVEEG MVAVLNYSLM GNFMMVYGHV PGATSGVRRL CLELPELAPL LYLDSDEVST  300
AEEREIHELW RVLKDEMCLP LMISLCQLNN LSLPPCLMAL PGDVKAKVLE FVPGVDLARV  360
QCTCKELRDL AADDNLWKKK CEMEFNTQDT CGCMMCKCIY SDQRKDIVLA DKYTCGNYMQ  420
KPVSQPGRWL IILVYHSLLC QYITIGLSLL WYHLVDLVQP QRSKYKNPIR CQHTSACRWQ  480
DAPAAGIHFD CIIPLPINPY QLPPSAGACC STTQASASAK DGGNVLQIPK PLEMYSPPCS  540
AAASSQGHCF AVGANQLASL DLAMDFDEPI LFPVHNASLQ EGIQFYNPTG DTQLSRNMSI  600
DKCLKGSKRK GSGEGSSSLH SQEETGEMPQ RELSMEHAGE KAGDADASRE EYVHVRAKRG  660
QATNSHSLAE RFRREKINER MKLLQDLVPG CNKITGKAMM LDEIINYVQS LQRQVEFLSM  720
KLSTISPELN SDLDLQDILC SQDARSAFLG CSPQLSNAHP NLYRAAQQCL SPPGLYGSVC  780
VPNPADVHLA RAGHLASFPQ QRGLIWNEEL RNIAPAGFAS DAAGTSSLEN SDSMKVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0GEH70.0A0A0E0GEH7_ORYNI; Uncharacterized protein
STRINGLOC_Os03g12940.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-45bHLH family protein